Bridging Fiji and OpenMPI for Easy-to-Use Parallel Processing of Images
Outline
- Gain access to remote HPC
- Installation and configuration of the plugin
- Upload, run and download macros remotely
- Monitoring progress, output and error reporting
- Parallelization of a Macro script
- How to use the progress reporting functions
- Demonstration of a real parallel macro
- Advanced parallelization of processing on large images by use of MPI-aware Ops
Workshop structure
- Each part of the workshop is hands-on.
- The participants are expected to first attempt to work through the practical worksheets.
- Follow the link in the presentation to open the worksheet.
- The worksheets will then be presented and explained by the presenter.
Gain access to remote HPC
Gain access to remote HPC
Installation and configuration of the plugin
Installation and configuration of the plugin
- Installation:
Installation and configuration of the plugin
- Configuration:
Upload, run and download macros remotely
Upload, run and download macros remotely
Monitoring progress, output and error reporting
Monitoring progress, output and error reporting
Parallelization of a Macro script
Parallelization of a Macro script
How to use the progress reporting functions
How to use the progress reporting functions
Demonstration of a real parallel macro
Demonstration of a real parallel macro
Advanced parallelization of processing on large images by use of MPI-aware Ops
Advanced parallelization of processing on large images by use of MPI-aware Ops
Discussion
Discussion
- Recap
- Gain access to remote HPC
- Installation and configuration of the plugin
- Upload, run and download macros remotely
- Monitoring progress, output and error reporting
- Parallelization of a Macro script
- How to use the progress reporting functions
- Demonstration of a real parallel macro
- Advanced parallelization of processing on large images by use of MPI-aware Ops
Thank you!